My guess is that the new air box, being attached to four carbs, will pose the same issues when disconnecting it, as it will pretty much be the same thing as the OEM. I don't see how this will be an advantage. The vacuum will need to be roughly the same, which means the internal volume of the box will need to be identical, for the carbs to function properly (to create the same vacuum levels).
Each piston creates its own vacuum; the air box blends all four pistons' vacuum into one, average level. With pods, each has its own, unique vacuum pattern (rises with intake stroke/falls after that), and level (constantly varying). With one air box, each carb is subjected to a more consistent level of vacuum, all of the time, which varies with acceleration/deceleration, but they all have the same average level. These carbs were designed for that constant,
averaging vacuum level.
Change the size of the air box, and you change the vacuum/air flow levels per RPM. I suspect you would be right back to the pod jetting issue, trying to find the 'right' jets to use. My thoughts are that Honda engineers struggled with the carbs when they designed the engine, and they chose the happiest balance for these Constant Velocity carbs. YMMV, of course. Cheers!
1979 CB750K (sold, 2012, but not forgotten)
1983 Kawasaki 440 LTD Belt Drive (sold, 2011)
1993 Kawasaki Voyager XII