Hmm...
Too much back pressure will make for hard starting and engine dying. If it was running well before the exhaust swap, then I suspect something with the new stuff. How long will it run before it dies?
If the muffler is plugged, the engine may start, but it won't rev very well, and may load up the engine with excess fuel and flood it out. The more it's plugged, the worse it'll run. Try running it without the muffler. (If you liked it before, you'll probably love it with straight pipes.)
Assuming the new exhaust is good, with the flow opening up, you'll have less back pressure in the engine. Some would recommend going a bit richer on the carb mixture, and/or going to 1 step larger jets.
I'm sure others will chime in with suggestions. I hope this helps.
Luke M
Used to have a 1979 CB750L, sold it as a parts bike, now riding a slightly modified 1984 VT700C. Network/Field Engineer. Central OH, USA, Earth, Sol System, Milky Way Galaxy, Universe.