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well... my advice really is to check the compression and tune it up. I don't think your problems are related to the electrical system, considering all the parts you've thrown at that. I don't see how a bad battery could hold your top speed all the way back to 60-65. With 80k on the bike, your valve clearances are probably off, and your timing might need to be adjusted. Have you checked your timing? It's easier with a gun, but you don't need one to do it.
partsnmore.com has a compression tool for about $40, and it's well worth it. I'd really suggest checking that before throwing a lot more parts at the problem and hoping that one of them fixes it.
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