I have never seen those cyclex carbs up close so it is hard to say. You might want to call ken at cyclex though and pass it buy him once.
I would suggest checking out your spark plugs and see what they look like. The condition sounds like it may be lean. Has there been any mods to the motor itself, 836 kit, porting, new cams?
Timing might be another possible issue. Are you still running points or some sort of electronic?
Another thing to check though I doubt it is the issue. Can you turn the rear tire without it binding and releasing?
The last part I didnt really understand. Were you wondering if it is possible to use 2 different case halves from 2 different motors?
The ride IS the adventure. The destination is just to get gas!