As old as these bikes are this will be more common. Take your time with the carbs. I'd do all 4 if it was me.
Make sure all your floats are set right. The sync will come later and should not effect it right now anyway. You need all 4 firing to have a good sync. It is usualy one of the last things I do when rebuilding carbs. Most of the time if you dont mess with the setting screws you will not need to adjust them much. I'd get all four intake boots. If 2 are bad the others are not far behind.